PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04508g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19527.1 Da    PI: 5.0659
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04508g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94.1e-211766149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                              k+i  ks  qvtfskR+ g+lKKA+ELS+LCda+va+i+ s+  +k+y +
  Peinf101Scf04508g00003.1 17 KKIAKKSSLQVTFSKRKSGLLKKASELSTLCDAQVALIVQSPAaNKIYSF 66
                              678899999*******************************9852666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-24969IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.072970IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-251096IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-141131IPR002100Transcription factor, MADS-box
PfamPF003198.3E-221866IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-143146IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-144667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEERKKKTKG RQILPMKKIA KKSSLQVTFS KRKSGLLKKA SELSTLCDAQ VALIVQSPAA  60
NKIYSFGNPS VDSVINRFQQ NTNNNKGEMY ADLFQENTRE NYWWDYDDQT LENMGLQEFE  120
ECMTAMQVLK KNLLKRADDL ANMNIDDFAN LNVPSDDDPL QYFDFESFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601728.12e-48PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_016463824.12e-48PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DJG17e-44M1DJG1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000900242e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26AGAMOUS-like 62